Package: LPE

Version: 1.25.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings LPE_1.25.0.tar.gz

StartedAt: 2011-02-24 20:25:36 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 20:26:09 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 32.9 seconds

RetCode: 0

Status:  OK

CheckDir: LPE.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/LPE.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.25.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LPE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (LPE)

name	user	system	elapsed
am.trans	0	0	0
baseOlig.error	0.91	0.00	0.91
baseOlig.error.step1	0.37	0.00	0.37
baseOlig.error.step2	0.56	0.00	0.56
fdr.adjust	3.58	0.00	3.58
fixbounds.predict.smooth.spline	0.63	0.00	0.62
iqr	0	0	0
lowess.normalize	0.07	0.00	0.08
lpe	1.32	0.00	1.31
mt.rawp2adjp	1.04	0.00	1.05
n.genes.adaptive.int	0.33	0.00	0.33
permute	0	0	0
preprocess	0.16	0.00	0.15
quan.norm	0	0	0
quartile.normalize	0.05	0.00	0.05
resamp.adj	4.23	0.00	4.23