Package: ITALICS

Version: 2.11.1

Command: /Users/biocbuild/BBS/utils/build-universal.sh ITALICS_2.11.1.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R ITALICS.buildbin-libdir

StartedAt: 2011-02-24 17:20:59 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 17:21:05 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 6.5 seconds

RetCode: 0

Status:  OK

PackageFile: ITALICS_2.11.1.tgz

PackageFileSize: 448.1 KiB

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=ITALICS.buildbin-libdir ITALICS_2.11.1.tar.gz'
>>>>>>> 

* installing *source* package 'ITALICS' ...
** R
** inst
** preparing package for lazy loading


######################################################################################



Have fun with GLAD



For smoothing it is possible to use either

the AWS algorithm (Polzehl and Spokoiny, 2002)

or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)



If you use the package with AWS, please cite:

Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)



If you use the package with HaarSeg, please cite:

Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)



For fast computation it is recommanded to use

the daglad function with smoothfunc=haarseg



######################################################################################



New options are available in daglad: see help for details.


Loading required package: oligoClasses
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

================================================================================
Welcome to oligoClasses version 1.13.9
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
================================================================================
Welcome to oligo version 1.15.4
================================================================================
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ITALICS)