Package: GeneGA

Version: 1.1.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneGA_1.1.2.tar.gz

StartedAt: 2011-02-24 19:22:17 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:25:07 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 170.3 seconds

RetCode: 0

Status:  OK

CheckDir: GeneGA.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/GeneGA.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneGA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GeneGA’ version ‘1.1.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneGA’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GeneCodon: no visible binding for global variable ‘wSet’
GeneGA: no visible binding for global variable ‘wSet’
GeneGA_internal: no visible binding for global variable ‘wSet’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘GeneGA’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GeneR

Attaching package: 'GeneR'

The following object(s) are masked from 'package:utils':

    relist


Attaching package: 'seqinr'

The following object(s) are masked from 'package:GeneRfold':

    dotPlot

The following object(s) are masked from 'package:GeneR':

    translate


  hash-2.0.1 provided by Open Data.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneGA)

name	user	system	elapsed
GeneCodon	0.202	0.004	0.220
GeneFoldGA	11.506	0.031	11.560
GeneGA-package	11.760	0.071	11.901
GeneGA	89.240	0.187	90.039
plotGeneGA-methods	11.484	0.034	11.609
wSet	0.009	0.001	0.009