AnnotationDbi 1.13.14
Biocore Team c/o BioC user list
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/AnnotationDbi | | Last Changed Rev: 52015 / Revision: 53255 | | Last Changed Date: 2011-01-21 18:35:05 -0800 (Fri, 21 Jan 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | [ TIMEOUT ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | TIMEOUT | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | TIMEOUT | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | ERROR | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | ERROR | OK |
* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/AnnotationDbi.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AnnotationDbi/DESCRIPTION’ ... OK
* this is package ‘AnnotationDbi’ version ‘1.13.14’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘AnnotationDbi’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.getSubNodeInfo: no visible global function definition for ‘Stop’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'buildEntrezGeneDb':
getGeneStuff
Code: function(entrezGenes, dir = "files")
Docs: function(entrezGenes)
Argument names in code not in docs:
dir
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: org.Hs.eg.db
* checking examples ...
* installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (AnnotationDbi)