Package: Agi4x44PreProcess

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Agi4x44PreProcess_1.11.0.tar.gz

StartedAt: 2011-02-24 14:52:10 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 14:53:13 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 62.9 seconds

RetCode: 0

Status:  OK

CheckDir: Agi4x44PreProcess.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

name	user	system	elapsed
Agi4x44PreProcess-package	0.000	0.001	0.001
BGandNorm	0.000	0.000	0.001
BoxPlot	0	0	0
CV.rep.probes	0.000	0.000	0.001
HeatMap	0	0	0
MVAplotMED	0	0	0
MVAplotMEDctrl	1.909	0.027	1.936
PCAplot	0.000	0.000	0.001
RLE	0	0	0
boxplotNegCtrl	0	0	0
build.eset	0	0	0
build.mappings	0	0	0
dd	0	0	0
ensembl.htmlpage	0	0	0
filter.NonUnifOL	0	0	0
filter.PopnOL	0.001	0.000	0.000
filter.control	0.001	0.000	0.001
filter.isfound	0	0	0
filter.probes	0.000	0.000	0.001
filter.saturated	0	0	0
filter.wellaboveBG	0	0	0
filter.wellaboveNEG	0	0	0
genes.rpt.agi	3.163	0.147	3.338
gsea.files	0	0	0
hierclus	0.000	0.000	0.001
plotDensity	0	0	0
read.AgilentFE	0.206	0.004	0.210
read.targets	0.002	0.000	0.003
summarize.probe	0	0	0
targets	0.001	0.000	0.001
write.eset	0.001	0.000	0.000