Package: affydata

Version: 1.11.10

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch affydata_1.11.10.tar.gz

StartedAt: 2011-02-27 14:27:06 -0800 (Sun, 27 Feb 2011)

EndedAt: 2011-02-27 14:28:03 -0800 (Sun, 27 Feb 2011)

EllapsedTime: 56.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: affydata.Rcheck

Warnings: 2

* using log directory ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/affydata.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘affydata/DESCRIPTION’ ... OK
* this is package ‘affydata’ version ‘1.11.10’
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘affydata’ can be installed ... WARNING
Found the following significant warnings:
  Warning: /Users/biocbuild/bbs-2.7-data-experiment/meat/affydata.Rcheck/00_pkg_src/affydata/man/Dilution.Rd: docType ‘instance’ is unrecognized
See ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/affydata.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... WARNING
prepare_Rd: Dilution.Rd: docType ‘instance’ is unrecognized
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... NONE
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  ‘/Users/biocbuild/bbs-2.7-data-experiment/meat/affydata.Rcheck/00check.log’
for details

* installing *source* package ‘affydata’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
Warning: /Users/biocbuild/bbs-2.7-data-experiment/meat/affydata.Rcheck/00_pkg_src/affydata/man/Dilution.Rd: docType ‘instance’ is unrecognized
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (affydata)