Package: graph

Version: 1.28.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings graph_1.28.0.tar.gz

StartedAt: 2011-04-07 10:57:18 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 10:59:11 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 113.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: graph.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'graph/DESCRIPTION' ... OK
* this is package 'graph' version '1.28.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... WARNING
Subdirectory 'src' contains:
  BioC_graph.dll
These are unlikely file names for src files.
* checking whether package 'graph' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: Rgraphviz
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'graph_unit_tests.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck/00check.log'
for details

* installing *source* package 'graph' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.7-B/R/include"         -O2 -Wall  -std=gnu99 -c graph.c -o graph.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o graph.dll tmp.def graph.o -LD:/biocbld/BBS-2˜1.7-B/R/bin/x64 -lR
mv graph.dll BioC_graph.dll
installing to D:/biocbld/bbs-2.7-bioc/meat/graph.Rcheck/graph/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

name	user	system	elapsed
DFS	0.06	0.00	0.06
IMCA	0.23	0.03	0.26
MAPKsig	0.14	0.00	0.23
MultiGraph-class	0.08	0.00	0.08
acc-methods	0.01	0.00	0.02
addEdge	0	0	0
addNode	0.01	0.00	0.02
adj-methods	0.02	0.00	0.01
apoptosisGraph	0.03	0.00	0.04
attrData-class	0	0	0
aveNumEdges	0.02	0.00	0.01
biocRepos	0.00	0.02	0.02
boundary	0	0	0
buildRepDepGraph	0	0	0
calcProb	0	0	0
calcSumProb	0.01	0.00	0.01
clearNode	0.02	0.00	0.02
clusterGraph-class	0	0	0
clusteringCoefficient-methods	0.01	0.00	0.01
combineNodes	0.05	0.00	0.05
distGraph-class	0	0	0
duplicatedEdges	0	0	0
edgeMatrix	0.03	0.00	0.03
edgeSets	0.03	0.00	0.03
edgeWeights	0	0	0
fromGXL-methods	0.40	0.01	0.47
graph-class	0.05	0.02	0.06
graph2SparseM	0.19	0.00	0.19
graphAM-class	0.08	0.00	0.08
graphBAM-class	0.03	0.01	0.04
graphExamples	0	0	0
graphNEL-class	0	0	0
inEdges	0	0	0
leaves	0.02	0.00	0.02
listEdges	0.01	0.00	0.02
matrix2Graph	0.02	0.00	0.01
mostEdges	0.01	0.00	0.01
numNoEdges	0.02	0.00	0.02
pancrCaIni	0.09	0.00	0.09
randomEGraph	0.02	0.00	0.02
randomGraph	0	0	0
randomNodeGraph	0	0	0
removeEdge	0	0	0
removeNode	0.02	0.00	0.02
renderInfo-class	0.00	0.02	0.01
reverseEdgeDirections	0	0	0
simpleEdge-class	0	0	0
standardLabeling	0.08	0.00	0.08
subGraph	0	0	0
toDotR-methods	0.04	0.00	0.05
ugraph	0	0	0
validGraph	0.02	0.00	0.01