Package: globaltest

Version: 5.4.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings globaltest_5.4.0.tar.gz

StartedAt: 2011-04-07 07:19:17 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:22:04 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 167.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: globaltest.Rcheck

Warnings: 1

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/globaltest.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... WARNING
Found the following significant warnings:
  Warning: use of a true value for 'ZipData' is deprecated
See 'E:/biocbld/bbs-2.7-bioc/meat/globaltest.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.7-bioc/meat/globaltest.Rcheck/00check.log'
for details

* installing *source* package 'globaltest' ...
** R
** data
Warning: use of a true value for 'ZipData' is deprecated
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (globaltest)

name	user	system	elapsed
comparative	4.55	0.00	4.60
diagnostics	0.93	0.00	0.95
genesettesting	0	0	0
gt	1.72	0.00	1.72
gt.object-class	1.52	0.00	1.51
gtoptions	0	0	0
mlogit	0.03	0.00	0.04
multtest	0.48	0.00	0.50
v4_checkerboard	0.10	0.00	0.09
v4_geneplot	0.62	0.00	0.64
v4_globaltest	9.78	0.00	9.83
v4_multtest	0.58	0.00	0.59
v4_permutations	7.33	0.01	7.35
v4_regressionplot	1.47	0.00	1.46
v4_sampleplot	0.58	0.00	0.61
v4_sampling	37.03	0.05	37.18