Package: attract

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch attract_1.2.0.tar.gz

StartedAt: 2011-03-31 04:34:18 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 04:36:54 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 156.1 seconds

RetCode: 0

Status:  OK

CheckDir: attract.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/attract.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘attract/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘attract’ version ‘1.2.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘attract’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘attract’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: Category
Loading required package: graph
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (attract)

name	user	system	elapsed
AttractorModuleSet-class	0	0	0
SynExpressionSet-class	0.002	0.000	0.002
attract-package	0.000	0.000	0.001
buildCorMatrix	0	0	0
buildKeggIncidenceMatrix	0	0	0
calcFuncSynexprs	0.001	0.000	0.001
calcInform	0.000	0.001	0.001
calcModfstat	0	0	0
calcRss	0	0	0
exprs.dat	0.474	0.016	0.493
findAttractors	4.201	0.245	4.506
findCorrPartners	5.867	0.966	6.898
findOnepwaySynexprs	0	0	0
findSynexprs	4.111	0.333	4.481
flagPwayExists	0	0	0
formatrankpathways	0	0	0
loring.eset	0.379	0.015	0.399
plotsynexprs	0.000	0.001	0.000
removeFlatGenes	0.776	0.142	0.924
samp.info	0.002	0.001	0.004
subset.loring.eset	0.192	0.009	0.203