Package: Rolexa

Version: 1.6.0

Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Rolexa_1.6.0.tar.gz

StartedAt: 2011-03-31 07:39:56 -0700 (Thu, 31 Mar 2011)

EndedAt: 2011-03-31 07:42:55 -0700 (Thu, 31 Mar 2011)

EllapsedTime: 178.8 seconds

RetCode: 0

Status:  OK

CheckDir: Rolexa.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/Rolexa.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Rolexa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Rolexa’ version ‘1.6.0’
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: fork
* checking if this is a source package ... OK
* checking whether package ‘Rolexa’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ForkBatch: no visible binding for global variable ‘Rolexa.env’
ForkBatch: no visible global function definition for ‘fork’
ForkBatch: no visible global function definition for ‘wait’
QualityBoxPlots: no visible binding for global variable ‘Rolexa.env’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘Rolexa’ ...
** R
** inst
** preparing package for lazy loading

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Rolexa)

name	user	system	elapsed
Batch	0.012	0.001	0.014
Model1	5.377	0.498	5.902
Model3	0.612	0.032	0.645
Plots1	2.781	0.106	2.898
Plots2	0.204	0.014	0.229
Plots3	0.379	0.036	0.496