Package: RTCA

Version: 1.2.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings RTCA_1.2.0.tar.gz

StartedAt: 2011-04-07 08:51:38 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 08:52:20 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 41.5 seconds

RetCode: 0

Status:  OK

CheckDir: RTCA.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/RTCA.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RTCA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RTCA’ version ‘1.2.0’
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RTCA’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘essentials.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘RTCA’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "time" in "RTCA"
Creating a new generic function for "plot" in "RTCA"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RTCA)

name	user	system	elapsed
RTCA-class	0.360	0.008	0.370
RTCAtimeline-class	0.004	0.000	0.003
alphaNames	0.008	0.000	0.006
combineRTCA	0.416	0.004	0.421
controlView	0.316	0.008	0.325
derivativeTransform	0.292	0.000	0.294
factor2numeric	0.000	0.004	0.002
interpolationTransform	1.012	0.036	1.048
nearestTimeIndex	0.364	0.000	0.367
parseRTCA	0.304	0.000	0.305
plateView	0.244	0.004	0.248
plotGridEffect	0.752	0.004	0.756
ratioTransform	0.248	0.000	0.249
rgrTransform	1.440	0.000	2.291
sliceRTCA	0.268	0.000	0.269
smoothTransform	0.836	0.000	0.837
spectramaxImport	0.012	0.004	0.016