Package: RMAPPER

Version: 1.0.0

Command: D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings RMAPPER_1.0.0.tar.gz

StartedAt: 2011-04-07 12:49:02 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 12:50:24 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 82.2 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: RMAPPER.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.7-bioc/meat/RMAPPER.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RMAPPER/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RMAPPER' version '1.0.0'
* checking package name space information ...Warning: unknown namespace directive: exportMethod("query")
Warning: unknown namespace directive: exportMethod("hits")
 OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RMAPPER' can be installed ... WARNING
Found the following significant warnings:
  Warning: unknown namespace directive: exportMethod("query")
  Warning: unknown namespace directive: exportMethod("hits")
  Warning: unknown namespace directive: exportMethod("query")
  Warning: unknown namespace directive: exportMethod("hits")
See 'D:/biocbld/bbs-2.7-bioc/meat/RMAPPER.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.7-bioc/meat/RMAPPER.Rcheck/00check.log'
for details

* installing *source* package 'RMAPPER' ...
** R
** inst
** preparing package for lazy loading
Warning: unknown namespace directive: exportMethod("query")
Warning: unknown namespace directive: exportMethod("hits")
** help
*** installing help indices
** building package indices ...
Warning: unknown namespace directive: exportMethod("query")
Warning: unknown namespace directive: exportMethod("hits")
** testing if installed package can be loaded

* DONE (RMAPPER)

name	user	system	elapsed
hits	0	0	0
mapperHits-class	0	0	0
query	0	0	0
readMapper	0.03	0.00	16.30
rmapperFactorTable	0.00	0.00	16.78
rmapperHelp	0.00	0.00	2.36