LVSmiRNA 1.0.0
Stefano Calza
| Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/LVSmiRNA | | Last Changed Rev: 51168 / Revision: 54588 | | Last Changed Date: 2010-12-01 13:46:11 -0800 (Wed, 01 Dec 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ WARNINGS ] | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | OK |
* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/LVSmiRNA.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LVSmiRNA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LVSmiRNA' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
multicore Rmpi
* checking if this is a source package ... OK
* checking whether package 'LVSmiRNA' can be installed ... WARNING
Found the following significant warnings:
Warning: S3 method 'plot.RA' was declared in NAMESPACE but not found
See 'E:/biocbld/bbs-2.7-bioc/meat/LVSmiRNA.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... WARNING
Warning: declared S3 method 'plot.RA' not found
See section 'Generic functions and methods' of the 'Writing R
Extensions' manual.
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
'E:/biocbld/bbs-2.7-bioc/meat/LVSmiRNA.Rcheck/00check.log'
for details
* installing *source* package 'LVSmiRNA' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c basic_fns.c -o basic_fns.o
basic_fns.c: In function 'lvs_median':
basic_fns.c:146:7: warning: unused variable 'i'
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -DHAVE_ZLIB -O3 -Wall -std=gnu99 -c lvs_rlm.c -o lvs_rlm.o
gcc -shared -s -static-libgcc -o LVSmiRNA.dll tmp.def basic_fns.o init.o lvs_rlm.o -lRzlib -lgfortran -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lRblas -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/LVSmiRNA.Rcheck/LVSmiRNA/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: SparseM
Package SparseM (0.87) loaded.
To cite, see citation("SparseM")
Attaching package: 'SparseM'
The following object(s) are masked from 'package:base':
backsolve
Creating a new generic function for "plot" in "LVSmiRNA"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning: S3 method 'plot.RA' was declared in NAMESPACE but not found
* DONE (LVSmiRNA)