Package: LPE

Version: 1.24.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings LPE_1.24.0.tar.gz

StartedAt: 2011-04-07 07:40:30 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:41:15 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 44.8 seconds

RetCode: 0

Status:  OK

CheckDir: LPE.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/LPE.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LPE/DESCRIPTION' ... OK
* this is package 'LPE' version '1.24.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'LPE' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'LPE' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (LPE)

name	user	system	elapsed
am.trans	0	0	0
baseOlig.error	1.05	0.00	1.05
baseOlig.error.step1	0.46	0.00	0.46
baseOlig.error.step2	0.8	0.0	0.8
fdr.adjust	5.42	0.00	5.47
fixbounds.predict.smooth.spline	0.97	0.02	0.98
iqr	0	0	0
lowess.normalize	0.08	0.00	0.08
lpe	2.00	0.00	2.03
mt.rawp2adjp	1.59	0.00	1.60
n.genes.adaptive.int	0.46	0.00	0.45
permute	0	0	0
preprocess	0.25	0.00	0.25
quan.norm	0.01	0.00	0.02
quartile.normalize	0.07	0.00	0.06
resamp.adj	6.82	0.00	6.89