Package: HTqPCR

Version: 1.4.0

Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.4.0.tar.gz

StartedAt: 2011-04-07 07:04:05 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 07:05:17 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 71.8 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/HTqPCR.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.4.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	3.380	0.024	3.405
cbind	0.020	0.004	0.024
changeCtLayout	0.020	0.004	0.027
clusterCt	0.608	0.008	0.615
filterCategory	0.084	0.004	0.088
filterCtData	0.260	0.000	0.262
heatmapSig	1.464	0.004	1.470
limmaCtData	0.884	0.012	0.901
mannwhitneyCtData	1.416	0.008	1.428
normalizeCtData	0.376	0.000	0.377
plotCVBoxes	0.168	0.000	0.167
plotCtBoxes	0.056	0.000	0.053
plotCtCard	0.044	0.004	0.050
plotCtCategory	3.072	0.032	3.106
plotCtCor	0.044	0.004	0.046
plotCtDensity	0.024	0.008	0.031
plotCtHeatmap	3.021	0.008	3.039
plotCtHistogram	0.004	0.004	0.009
plotCtOverview	0.100	0.000	0.102
plotCtPCA	0.032	0.008	0.040
plotCtPairs	0.652	0.000	0.652
plotCtRQ	0.348	0.000	0.351
plotCtReps	0.132	0.000	0.132
plotCtScatter	0.020	0.000	0.022
plotCtSignificance	0.388	0.000	0.393
plotGenes	0.020	0.008	0.026
qPCRpros	0.004	0.000	0.004
qPCRraw	0.004	0.000	0.004
qPCRset-class	0.028	0.000	0.027
readCtData	0.052	0.000	0.051
setCategory	5.052	0.012	5.078
ttestCtData	1.016	0.000	1.017