GenomicFeatures 1.2.5 Biocore Team c/o BioC user list
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011) | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GenomicFeatures | Last Changed Rev: 53414 / Revision: 54588 | Last Changed Date: 2011-03-03 10:42:18 -0800 (Thu, 03 Mar 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | ERROR | |
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | [ ERROR ] | OK |
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | ERROR | OK |
* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/GenomicFeatures.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomicFeatures/DESCRIPTION' ... OK
* this is package 'GenomicFeatures' version '1.2.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomicFeatures' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
Running 'GenomicFeatures_unit_tests.R'
ERROR
Running the tests in 'tests/GenomicFeatures_unit_tests.R' failed.
Last 13 lines of output:
GenomicFeatures RUnit Tests - 14 test functions, 0 errors, 1 failure
FAILURE in test_makeTranscriptDbFromBiomart: Error in checkTrue(ok) : Test not TRUE
Test files with failing tests
test_makeTranscriptDbFromBiomart.R
test_makeTranscriptDbFromBiomart
Error in GenomicFeatures:::.test() :
unit tests failed for package GenomicFeatures
Execution halted
* installing *source* package 'GenomicFeatures' ...
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
pmin.int, rbind, rep.int, table
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (GenomicFeatures)