Package: BioSeqClass

Version: 1.8.0

Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings BioSeqClass_1.8.0.tar.gz

StartedAt: 2011-04-07 06:15:08 -0700 (Thu, 07 Apr 2011)

EndedAt: 2011-04-07 06:18:52 -0700 (Thu, 07 Apr 2011)

EllapsedTime: 224.7 seconds

RetCode: 0

Status:  OK

CheckDir: BioSeqClass.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/BioSeqClass.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'BioSeqClass/DESCRIPTION' ... OK
* this is package 'BioSeqClass' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'BioSeqClass' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: selectWeka.Rd:49-51: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: scatterplot3d
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'BioSeqClass' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: rpart
Loading required package: MASS
Loading required package: mlbench
Loading required package: survival
Loading required package: splines
Loading required package: class
Loading required package: nnet
Loading required package: mvtnorm
Loading required package: modeltools
Loading required package: stats4
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BioSeqClass)

name	user	system	elapsed
basic	0.96	0.02	0.98
classify	17.82	0.08	19.66
featureAAindex	0	0	0
featureBDNAVIDEO	0	0	0
featureBinary	0	0	0
featureCKSAAP	0	0	0
featureCTD	0	0	0
featureDIPRODB	0	0	0
featureDOMAIN	0	0	0
featureEvaluate	0.02	0.00	0.02
featureFragmentComposition	0	0	0
featureGapPairComposition	0	0	0
featureHydro	0	0	0
featurePSSM	0	0	0
featurePseudoAAComp	0	0	0
featureSSC	0	0	0
hr	0	0	0
model	6.82	0.00	6.85
performance	6.33	0.03	6.41
selectFFS	4.98	0.03	5.04