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Package 57/419HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.8.0
Marcus Dittrich
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/BioNet
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: BioNet
Version: 1.8.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings BioNet_1.8.0.tar.gz
StartedAt: 2011-04-07 05:10:08 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 05:12:36 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 147.7 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/BioNet.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BioNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BioNet’ version ‘1.8.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BioNet’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package ‘BioNet’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals0.6840.0520.736
bumOptim1.0840.0121.094
compareNetworks2.2960.0282.326
fbum0.0000.0000.001
fbumLL1.2920.0041.295
fdrThreshold0.9640.0000.962
fitBumModel1.4640.0001.462
getCompScores2.8880.0242.913
getEdgeList1.1040.0081.114
hist.bum1.1760.0001.177
largestComp 9.997 0.02010.015
largestScoreComp10.625 0.03610.660
loadNetwork.sif000
makeNetwork0.0120.0000.009
mapByVar000
permutateNodes13.485 0.06013.543
piUpper1.1560.0081.164
plot.bum1.7160.0081.723
plot3dModule3.3840.0203.404
plotLLSurface1.3840.0041.388
plotModule3.6560.0043.665
print.bum1.2960.0001.297
pvaluesExample0.0080.0000.008
readHeinzGraph0.2760.0000.275
readHeinzTree0.2800.0000.277
rmSelfLoops0.0080.0000.008
runFastHeinz9.4770.0049.480
save3dModule2.3400.0002.338
saveNetwork1.9720.0081.982
scanFDR1.1400.0001.139
scoreFunction1.0320.0361.070
scoreNodes3.9010.0203.923
scoreOffset1.6000.0001.602
subNetwork0.0400.0040.040
summary.bum1.5920.0041.593
writeHeinz2.3960.0042.402
writeHeinzEdges6.9880.0006.986
writeHeinzNodes2.6090.0082.615