Package: yeastExpData

Version: 0.9.17

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings yeastExpData_0.9.17.tar.gz

StartedAt: 2010-09-24 05:00:39 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 05:01:07 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 28.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: yeastExpData.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-data-experiment/meat/yeastExpData.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'yeastExpData/DESCRIPTION' ... OK
* this is package 'yeastExpData' version '0.9.17'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yeastExpData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Data codoc mismatches from documentation object 'gfp':
Variables in data frame 'gfp'
  Code: abundance actin ambiguous bud bud_neck cell_periphery cytoplasm
        early_Golgi endosome ER ER_to_Golgi error gene_name GFP_tagged
        GFP_visualized Golgi late_Golgi lipid_particle
        localization_summary microtubule missingAbundance mitochondrion
        nuclear_periphery nucleolus nucleus orfid peroxisome
        punctate_composite spindle_pole TAP_visualized
        vacuolar_membrane vacuole yORF
  Docs: abundance error gene_name GFP_tagged GFP_visualized
        localization_summary orfid TAP_visualized yORF

Data codoc mismatches from documentation object 'proteinProperties':
Variables in data frame 'proteinProperties'
  Code: ALA ARG aromaticity ASN ASP cai codonBias cterm CYS fop GLN GLU
        GLY gravy HIS ILE length LEU LYS MET molwt nterm PHE pi PRO SER
        SGDID THR TRP type TYR VAL yORF
  Docs: cai codonBias cterm length molwt nterm pi SGDID yORF

* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  E:/biocbld/bbs-2.6-data-experiment/meat/yeastExpData.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package 'yeastExpData' ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (yeastExpData)

name	user	system	elapsed
ccyclered	0.02	0.01	0.03
fcabundance	0.11	0.00	0.11
gfp	0.40	0.02	0.42
litG	0.04	0.00	0.03
nPdist	0	0	0
proteinProperties	1.01	0.00	1.04