Package: yeastCC

Version: 1.2.11

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings yeastCC_1.2.11.tar.gz

StartedAt: 2010-09-24 04:13:57 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 04:15:27 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 89.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: yeastCC.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-data-experiment/meat/yeastCC.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'yeastCC/DESCRIPTION' ... OK
* this is package 'yeastCC' version '1.2.11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'yeastCC' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  breeden
All user-level objects in a package should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.6-data-experiment/meat/yeastCC.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package ‘yeastCC’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (yeastCC)

name	user	system	elapsed
orf800	0.020	0.003	0.111
spYCCmeta	0.025	0.016	0.089
yeastCC	0.390	0.039	1.045