Package: pumadata

Version: 1.0.3

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings pumadata_1.0.3.tar.gz

StartedAt: 2010-09-24 02:59:30 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 03:00:06 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 35.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: pumadata.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-data-experiment/meat/pumadata.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'pumadata/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'pumadata' version '1.0.3'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'pumadata' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Invalid citation information in 'inst/CITATION':
  Error in data.frame(File = file, Entry = entries, stringsAsFactors = FALSE) : 
    arguments imply differing number of rows: 1, 0
  Calls: <Anonymous> -> get_CITATION_entry_fields -> data.frame
  Execution halted
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /loc/home/biocbuild/bbs-2.6-data-experiment/meat/pumadata.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package 'pumadata' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: mclust

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (pumadata)

name	user	system	elapsed
eset_estrogen_comb	0.056	0.000	0.055
eset_estrogen_mmgmos	0.320	0.012	0.331
eset_estrogen_rma	0.044	0.004	0.047
pumapca_estrogen	0.072	0.000	0.070