Package: ppiData

Version: 0.1.14

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings ppiData_0.1.14.tar.gz

StartedAt: 2010-09-24 04:05:18 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 04:08:47 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 209.2 seconds

RetCode: 0

Status:  OK

CheckDir: ppiData.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-data-experiment/meat/ppiData.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'ppiData/DESCRIPTION' ... OK
* this is package 'ppiData' version '0.1.14'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ppiData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: intAct2Sys.Rd:33-35: Dropping empty section \examples
prepare_Rd: twTableAPMS.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableAPMS.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableAPMS.Rd:27-28: Dropping empty section \references
prepare_Rd: twTableY2H.Rd:22-23: Dropping empty section \details
prepare_Rd: twTableY2H.Rd:24-26: Dropping empty section \source
prepare_Rd: twTableY2H.Rd:27-28: Dropping empty section \references
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘ppiData’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ppiData)

name	user	system	elapsed
Cagney2001BPGraph	0.003	0.001	0.003
Gavin2002BPGraph	0.002	0.001	0.002
Gavin2006bPGraph	0.002	0.001	0.004
Hazbun2003BPGraph	0.002	0.001	0.024
Ho2002BPGraph	0.002	0.001	0.003
Ito2001BPGraph	0.002	0.001	0.002
ItoCore2001BPGraph	0.002	0.001	0.020
ItoFull2001BPGraph	0.002	0.001	0.017
Krogan2004BPGraph	0.002	0.001	0.009
Krogan2006BPGraph	0.002	0.001	0.002
Tong2002BPGraph	0.002	0.001	0.011
Uetz2000BPGraph1	0.002	0.001	0.002
Uetz2000BPGraph2	0.002	0.001	0.013
Zhao2005BPGraph	0.002	0.000	0.003
bpExperimentNames	0.005	0.011	0.036
collectIntactPPIData	22.391	7.591	67.231
createBPList	0.019	0.002	0.021
intActPPIData	0.004	0.002	0.038
map2Systematic	0.005	0.001	0.071
ppipred	0.002	0.001	0.002
sWAC2Sys	0.002	0.001	0.002
stochasticBaits	0.007	0.001	0.008
tableList	0.010	0.001	0.012
twTableAPMS	0.002	0.000	0.004
twTableY2H	0.002	0.001	0.003
viableProteins	0.015	0.002	0.018
y2h	0.002	0.000	0.002
y2hSysGW	0.018	0.003	0.035