Package: faahKO

Version: 1.2.5

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings faahKO_1.2.5.tar.gz

StartedAt: 2010-09-24 02:24:19 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 02:24:36 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 17.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: faahKO.Rcheck

Warnings: 3

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-data-experiment/meat/faahKO.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'faahKO/DESCRIPTION' ... OK
* this is package 'faahKO' version '1.2.5'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'faahKO' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
Loading required package: methods
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... WARNING
Loading required package: methods
See section 'Generic functions and methods' of the 'Writing R Extensions'
manual.
* checking replacement functions ... OK
* checking foreign function calls ... WARNING
Loading required package: methods
See the chapter 'System and foreign language interfaces' of the 'Writing R
Extensions' manual.
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
Loading required package: methods
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There were 3 warnings, see
  /loc/home/biocbuild/bbs-2.6-data-experiment/meat/faahKO.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package 'faahKO' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (faahKO)

name	user	system	elapsed
faahko	0.676	0.064	0.740