Package: charmData

Version: 0.99.1

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings charmData_0.99.1.tar.gz

StartedAt: 2010-09-24 02:47:46 -0700 (Fri, 24 Sep 2010)

EndedAt: 2010-09-24 02:52:08 -0700 (Fri, 24 Sep 2010)

EllapsedTime: 262.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: charmData.Rcheck

Warnings: 1

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-data-experiment/meat/charmData.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'charmData/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'charmData' version '0.99.1'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'charmData' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... WARNING
Subdirectory 'data' contains no data sets.
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  /Users/biocbuild/bbs-2.6-data-experiment/meat/charmData.Rcheck/00check.log
for details

* install options are ' --no-html'

* installing *source* package ‘charmData’ ...
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

Loading package ff 2.1-2 
- getOption("fftempdir")=="/tmp/Rtmp3bOs3F"
- getOption("ffextension")=="ff"
- getOption("ffdrop")==TRUE
- getOption("fffinonexit")==TRUE
- getOption("ffpagesize")==65536
- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes
- getOption("ffbatchbytes")==16777216 -- consider a different value for tuning your system
Welcome to charm version 1.0.1
================================================================================
Welcome to oligoClasses version 1.10.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
================================================================================
Welcome to oligo version 1.12.2
================================================================================

* DONE (charmData)

name	user	system	elapsed