MAQCsubset 1.0.19
VJ Carey
| Snapshot Date: 2010-09-24 00:28:34 -0700 (Fri, 24 Sep 2010) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MAQCsubset | | Last Changed Rev: 1213 / Revision: 1309 | | Last Changed Date: 2010-04-20 14:11:54 -0700 (Tue, 20 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ WARNINGS ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.19'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... WARNING
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: 'boxplot', 'hist'
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: 'boxplot', 'hist'
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: 'boxplot', 'hist'
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'plot' and siglist 'proboStruct,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
/loc/home/biocbuild/bbs-2.6-data-experiment/meat/MAQCsubset.Rcheck/00check.log
for details
* install options are ' --no-html'
* installing *source* package 'MAQCsubset' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: mgcv
This is mgcv 1.6-2. For overview type 'help("mgcv-package")'.
Loading required package: preprocessCore
Loading required package: RSQLite
Loading required package: DBI
Loading required package: MASS
Creating a new generic function for "lines" in "MAQCsubset"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (MAQCsubset)