Package: vsn

Version: 3.16.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings vsn_3.16.0.tar.gz

StartedAt: 2010-10-04 20:30:10 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 20:31:20 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 69.9 seconds

RetCode: 0

Status:  OK

CheckDir: vsn.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/vsn.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'vsn/DESCRIPTION' ... OK
* this is package 'vsn' version '3.16.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'vsn' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'vsn' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c vsn.c -o vsn.o
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c vsn2.c -o vsn2.o
gcc -shared -s -static-libgcc -o vsn.dll tmp.def init.o vsn.o vsn2.o -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/meat/vsn.Rcheck/vsn/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "logLik" in "vsn"
Creating a new generic function for "coef" in "vsn"
Creating a new generic function for "coefficients" in "vsn"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (vsn)

name	user	system	elapsed
class.vsn	0.70	0.00	0.71
justvsn	2.25	0.00	2.25
kidney	0.11	0.02	0.12
lymphoma	0.03	0.01	0.05
meanSdPlot	0.09	0.02	0.11
normalize.AffyBatch.vsn	0	0	0
sagmbSimulateData	1.44	0.00	1.45
scalingFactorTransformation	0	0	0
vsn	0.91	0.00	0.90
vsn2	0.68	0.02	0.71
vsn2trsf	0.11	0.00	0.11
vsnLikelihood	5.13	0.01	5.14
vsnPlotPar	0	0	0
vsnh	0.01	0.02	0.03