Package: spotSegmentation

Version: 1.22.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings spotSegmentation_1.22.0.tar.gz

StartedAt: 2010-10-04 20:05:19 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 20:05:51 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 32.6 seconds

RetCode: 0

Status:  OK

CheckDir: spotSegmentation.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/spotSegmentation.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'spotSegmentation/DESCRIPTION' ... OK
* this is package 'spotSegmentation' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'spotSegmentation' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: plotBlockImage.Rd:20: Dropping empty section \author
prepare_Rd: plot.spotseg.Rd:23: Dropping empty section \author
prepare_Rd: spotgrid.Rd:21: Dropping empty section \details
prepare_Rd: spotgrid.Rd:33: Dropping empty section \note
prepare_Rd: spotgrid.Rd:34: Dropping empty section \author
prepare_Rd: spotseg.Rd:45: Dropping empty section \author
prepare_Rd: summary.spotseg.Rd:27: Dropping empty section \author
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'spotSegmentation' ...
** R
** data
** inst
** preparing package for lazy loading

by using mclust, invoked on its own or through another package,
you accept the license agreement in the mclust LICENSE file
and at http://www.stat.washington.edu/mclust/license.txt

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (spotSegmentation)

name	user	system	elapsed
plot.spotseg	6.396	0.016	6.412
plotBlockImage	0.164	0.012	0.179
spotgrid	0.200	0.008	0.210
spotseg	6.952	0.004	7.045
summary.spotseg	6.541	0.008	6.549