rsbml 2.6.0
Michael Lawrence
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/rsbml | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for file 'rsbml/DESCRIPTION' ... OK
* preparing 'rsbml':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'rsbml' ...
** libs
making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -g -D_R_=1 -DUSE_R=1 -I/include -I/include/expat -ID:/biocbld/bbs-2.6-bioc/R/include -DLIBSBML3 -O2 -Wall -std=gnu99 -c StringMap.c -o StringMap.o
StringMap.c:52:32: error: sbml/common/common.h: No such file or directory
StringMap.c:53:28: error: sbml/util/List.h: No such file or directory
In file included from StringMap.c:54:
StringMap.h:56:32: error: sbml/common/extern.h: No such file or directory
In file included from StringMap.c:54:
StringMap.h:63: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'typedef'
StringMap.h:74: error: expected specifier-qualifier-list before 'List_t'
StringMap.c:60: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'unsigned'
StringMap.c:67: error: expected ')' before '*' token
StringMap.c: In function 'StringMap_create':
StringMap.c:83: warning: implicit declaration of function 'malloc'
StringMap.c:83: warning: incompatible implicit declaration of built-in function 'malloc'
StringMap.c:84: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:84: error: 'List_t' undeclared (first use in this function)
StringMap.c:84: error: (Each undeclared identifier is reported only once
StringMap.c:84: error: for each function it appears in.)
StringMap.c:84: error: expected expression before ')' token
StringMap.c: In function 'StringMapItem_create':
StringMap.c:101: warning: incompatible implicit declaration of built-in function 'malloc'
StringMap.c:102: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:102: warning: implicit declaration of function 'safe_strdup'
StringMap.c:103: error: 'StringMapItem_t' has no member named 'value'
StringMap.c: In function 'StringMapItem_free':
StringMap.c:117: warning: implicit declaration of function 'safe_free'
StringMap.c:117: error: 'StringMapItem_t' has no member named 'key'
StringMap.c: In function 'StringMap_exists':
StringMap.c:131: error: 'NULL' undeclared (first use in this function)
StringMap.c: In function 'StringMap_findItem':
StringMap.c:142: error: 'List_t' undeclared (first use in this function)
StringMap.c:142: error: 'list' undeclared (first use in this function)
StringMap.c:145: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:148: warning: implicit declaration of function 'StringMap_findItemInList'
StringMap.c:151: error: 'NULL' undeclared (first use in this function)
StringMap.c: At top level:
StringMap.c:159: error: expected ')' before '*' token
StringMap.c:184: error: expected ')' before '*' token
StringMap.c: In function 'StringMap_free':
StringMap.c:212: error: 'NULL' undeclared (first use in this function)
StringMap.c:216: error: 'List_t' undeclared (first use in this function)
StringMap.c:216: error: 'items' undeclared (first use in this function)
StringMap.c:216: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:219: warning: implicit declaration of function 'List_size'
StringMap.c:221: warning: implicit declaration of function 'List_get'
StringMap.c:224: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:228: warning: implicit declaration of function 'List_free'
StringMap.c:232: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c: In function 'StringMap_get':
StringMap.c:251: error: 'StringMapItem_t' has no member named 'value'
StringMap.c:254: error: 'NULL' undeclared (first use in this function)
StringMap.c: In function 'StringMap_getHashIndex':
StringMap.c:265: warning: implicit declaration of function 'StringMap_hashFunction'
StringMap.c: In function 'StringMap_grow':
StringMap.c:275: error: 'List_t' undeclared (first use in this function)
StringMap.c:275: error: 'oldLists' undeclared (first use in this function)
StringMap.c:275: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:281: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:281: error: expected expression before ')' token
StringMap.c:287: error: 'oldList' undeclared (first use in this function)
StringMap.c:289: error: 'NULL' undeclared (first use in this function)
StringMap.c:294: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:294: error: 'StringMapItem_t' has no member named 'value'
StringMap.c:295: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:296: error: 'itemList' undeclared (first use in this function)
StringMap.c:296: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:300: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:300: warning: implicit declaration of function 'List_create'
StringMap.c:302: warning: implicit declaration of function 'List_add'
StringMap.c: At top level:
StringMap.c:316: error: conflicting types for 'StringMap_hashFunction'
StringMap.c:265: note: previous implicit declaration of 'StringMap_hashFunction' was here
StringMap.c: In function 'StringMap_put':
StringMap.c:342: error: 'List_t' undeclared (first use in this function)
StringMap.c:342: error: 'list' undeclared (first use in this function)
StringMap.c:353: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:353: error: 'NULL' undeclared (first use in this function)
StringMap.c:355: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:358: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:369: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:370: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:371: error: 'StringMapItem_t' has no member named 'value'
StringMap.c: In function 'StringMap_remove':
StringMap.c:384: error: 'List_t' undeclared (first use in this function)
StringMap.c:384: error: 'list' undeclared (first use in this function)
StringMap.c:387: error: 'StringMap_t' has no member named 'itemLists'
StringMap.c:390: warning: implicit declaration of function 'StringMap_findIndexOfItemInList'
StringMap.c:394: error: 'StringMapItem_t' has no member named 'key'
StringMap.c:396: warning: implicit declaration of function 'List_remove'
make: *** [StringMap.o] Error 1
... done
ERROR: compilation failed for package 'rsbml'
* removing 'D:/biocbld/bbs-2.6-bioc/tmpdir/Rinst137239392/rsbml'
ERROR
Installation failed.
Removing 'D:/biocbld/bbs-2.6-bioc/tmpdir/Rinst137239392'