* checking for file 'pcaMethods/DESCRIPTION' ... OK
* preparing 'pcaMethods':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'pcaMethods' ...
** libs
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I/loc/home/biocbuild/bbs-2.6-bioc/R/library/Rcpp/include -I/usr/local/include -fpic -g -O2 -c nipals.cpp -o nipals.o
g++ -shared -L/usr/local/lib64 -o pcaMethods.so nipals.o -L/loc/home/biocbuild/bbs-2.6-bioc/R/library/Rcpp/lib -lRcpp -Wl,-rpath,/loc/home/biocbuild/bbs-2.6-bioc/R/library/Rcpp/lib -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst1457416919/pcaMethods/libs
** R
** data
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Attaching package: 'pls'
The following object(s) are masked from 'package:stats':
loadings
Creating a new generic function for "print" in "pcaMethods"
Creating a new generic function for "biplot" in "pcaMethods"
Creating a new generic function for "summary" in "pcaMethods"
Creating a new generic function for "predict" in "pcaMethods"
Creating a new generic function for "residuals" in "pcaMethods"
Creating a new generic function for "resid" in "pcaMethods"
Creating a new generic function for "fitted" in "pcaMethods"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (pcaMethods)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'pcaMethods_1.30.0.tar.gz'