hexbin 1.22.0
Nicholas Lewin-Koh
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/hexbin | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/hexbin.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hexbin/DESCRIPTION' ... OK
* this is package 'hexbin' version '1.22.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hexbin' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
mixcolors: no visible global function definition for 'coords'
* checking Rd files ... NOTE
prepare_Rd: hexList.Rd:46-48: Dropping empty section \examples
prepare_Rd: hexViewport.Rd:25-27: Dropping empty section \details
prepare_Rd: hexVP.abline.Rd:43-45: Dropping empty section \examples
prepare_Rd: NHANES.Rd:41-43: Dropping empty section \references
prepare_Rd: panel.hexgrid.Rd:15-16: Dropping empty section \details
prepare_Rd: panel.hexgrid.Rd:23-24: Dropping empty section \examples
prepare_Rd: panel.hexloess.Rd:28-29: Dropping empty section \details
prepare_Rd: panel.hexloess.Rd:41-42: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking tests ...
Running 'hdiffplot.R'
Comparing 'hdiffplot.Rout' to 'hdiffplot.Rout.save' ...9c9
< Buggy version of Kinderman-Ramage generator used
---
> Buggy version of Kinderman-Ramage generator used.
24,25c24,25
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
43c43
< ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.9 ...
---
> ..@ ycm : num [1:545] -3.42 -3.45 -3.24 -3.35 -2.90 ...
64,65c64,65
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
84,85c84,85
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
89c89
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
109,110c109,110
< ..@ xcm : num [1:535] 0.37 1.338 0.721 -1.846 -0.965 ...
< ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.2 -3.24 ...
---
> ..@ xcm : num [1:535] 0.370 1.338 0.721 -1.846 -0.965 ...
> ..@ ycm : num [1:535] -3.66 -3.71 -3.54 -3.20 -3.24 ...
114c114
< ..@ ybnds : num [1:2] -4.23 4.7
---
> ..@ ybnds : num [1:2] -4.23 4.70
Running 'hray.R'
Running 'large.R'
Running 'viewp-ex.R'
OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* install options are ' --no-html'
* installing *source* package 'hexbin' ...
** libs
gfortran -fpic -g -O -c hbin.f -o hbin.o
gfortran -fpic -g -O -c hcell.f -o hcell.o
gfortran -fpic -g -O -c herode.f -o herode.o
gfortran -fpic -g -O -c hsm.f -o hsm.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o hexbin.so hbin.o hcell.o herode.o hsm.o -lgfortran -lm -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.6-bioc/meat/hexbin.Rcheck/hexbin/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "hexbin"
Creating a new generic function for "summary" in "hexbin"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (hexbin)