* checking for file 'girafe/DESCRIPTION' ... OK
* preparing 'girafe':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'girafe' ...
** libs
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c coverage.cpp -o coverage.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c girafe_init.c -o girafe_init.o
g++ -shared -L/usr/local/lib64 -o girafe.so coverage.o girafe_init.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst2001587048/girafe/libs
** R
** inst
** preparing package for lazy loading
Attaching package: 'IRanges'
The following object(s) are masked from 'package:base':
Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
rbind, rep.int, table
Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: lattice
Loading required package: Rsamtools
Attaching package: 'intervals'
The following object(s) are masked from 'package:Biostrings':
type
The following object(s) are masked from 'package:IRanges':
reduce
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Attaching package: 'Biobase'
The following object(s) are masked from 'package:IRanges':
updateObject
Attaching package: 'genomeIntervals'
The following object(s) are masked from 'package:GenomicRanges':
strand, strand<-
Creating a new generic function for "plot" in "girafe"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (girafe)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'girafe_1.0.0.tar.gz'