Package: frmaTools

Version: 1.0.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings frmaTools_1.0.0.tar.gz

StartedAt: 2010-10-04 17:29:16 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:31:14 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 118.1 seconds

RetCode: 0

Status:  OK

CheckDir: frmaTools.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/frmaTools.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frmaTools/DESCRIPTION' ... OK
* this is package 'frmaTools' version '1.0.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'frmaTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
hgu133a2ASaFrma: no visible binding for global variable
  'hgu133afrmavecs'
hgu133plus2ASaFrma: no visible binding for global variable
  'hgu133afrmavecs'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'frmaTools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: gcrma
Loading required package: preprocessCore

Attaching package: 'affyPLM'

The following object(s) are masked from 'package:stats':

    resid, residuals, weights

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (frmaTools)

name	user	system	elapsed
convertPlatform	17.933	0.268	18.751
hgu133a2ASaFrma	0	0	0
hgu133plus2ASaFrma	0	0	0
makeVectorPackage	0	0	0