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Package 123/389 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
flowCore 1.14.1 F. Hahne
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Package: flowCore |
Version: 1.14.1 |
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings flowCore_1.14.1.tar.gz |
StartedAt: 2010-10-04 17:18:17 -0700 (Mon, 04 Oct 2010) |
EndedAt: 2010-10-04 17:21:02 -0700 (Mon, 04 Oct 2010) |
EllapsedTime: 164.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: flowCore.Rcheck |
Warnings: 0 |
* checking for working pdflatex ... OK * using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/flowCore.Rcheck' * using R version 2.11.1 (2010-05-31) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'flowCore/DESCRIPTION' ... OK * this is package 'flowCore' version '1.14.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'flowCore' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking data for non-ASCII characters ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking for portable use of $BLAS_LIBS ... OK * checking examples ... OK * checking package vignettes in 'inst/doc' ... SKIPPED * checking PDF version of manual ... OK
flowCore.Rcheck/00install.out:
* install options are ' --no-html' * installing *source* package 'flowCore' ... ** libs gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c biexponential.c -o biexponential.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c inPolygon.c -o inPolygon.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c inPolytope.c -o inPolytope.o gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c init.c -o init.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o flowCore.so biexponential.o inPolygon.o inPolytope.o init.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR installing to /loc/home/biocbuild/bbs-2.6-bioc/meat/flowCore.Rcheck/flowCore/libs ** R ** data ** inst ** preparing package for lazy loading Welcome to Bioconductor Vignettes contain introductory material. To view, type 'openVignette()'. To cite Bioconductor, see 'citation("Biobase")' and for packages 'citation(pkgname)'. Loading required package: robustbase Loading required package: pcaPP Loading required package: mvtnorm Scalable Robust Estimators with High Breakdown Point (version 1.1-00) ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (flowCore)
flowCore.Rcheck/flowCore-Ex.timings:
name | user | system | elapsed | |
EHtrans-class | 0.208 | 0.012 | 0.220 | |
Subset-methods | 1.628 | 0.008 | 1.638 | |
actionItem-class | 0.000 | 0.000 | 0.001 | |
arcsinhTransform | 0.204 | 0.000 | 0.201 | |
asinht-class | 0.060 | 0.004 | 0.063 | |
biexponentialTransform | 11.649 | 0.256 | 11.905 | |
boundaryFilter-class | 0.224 | 0.004 | 0.228 | |
characterOrTransformation-class | 0.000 | 0.000 | 0.002 | |
coerce | 0.224 | 0.008 | 0.232 | |
compensateActionItem-class | 0.000 | 0.000 | 0.001 | |
compensateView-class | 0.004 | 0.000 | 0.001 | |
compensatedParameter-class | 0.304 | 0.000 | 0.305 | |
compensation-class | 0.732 | 0.000 | 0.731 | |
curv1Filter-class | 0.996 | 0.000 | 0.996 | |
curv2Filter-class | 3.924 | 0.004 | 3.928 | |
dg1polynomial-class | 0.048 | 0.004 | 0.052 | |
each_col-methods | 0.064 | 0.000 | 0.063 | |
ellipsoidGate | 0.132 | 0.000 | 0.132 | |
exponential-class | 0.048 | 0.004 | 0.050 | |
expressionFilter-class | 0.132 | 0.000 | 0.133 | |
fcReference-class | 0.004 | 0.000 | 0.001 | |
filter-methods | 1.260 | 0.004 | 1.265 | |
filter-on-methods | 0.260 | 0.004 | 0.264 | |
filterList-class | 0.020 | 0.000 | 0.019 | |
filterResult-class | 0.000 | 0.000 | 0.001 | |
filterResultList-class | 2.052 | 0.008 | 2.091 | |
filterSet-class | 0.096 | 0.004 | 0.100 | |
filterSummary-class | 0.656 | 0.000 | 0.656 | |
filterSummaryList-class | 1.820 | 0.004 | 1.826 | |
flowFrame-class | 4.233 | 0.044 | 4.278 | |
flowSet-class | 4.892 | 0.020 | 4.909 | |
fsApply | 0.320 | 0.000 | 0.318 | |
gateActionItem-class | 0.000 | 0.000 | 0.001 | |
gateView-class | 0.000 | 0.000 | 0.001 | |
hyperlog-class | 1.868 | 0.000 | 1.940 | |
identifier-methods | 0.044 | 0.000 | 0.041 | |
inverseLogicleTransform | 0.768 | 0.008 | 0.781 | |
invsplitscale-class | 0.048 | 0.004 | 0.052 | |
keyword-methods | 1.000 | 0.008 | 1.007 | |
kmeansFilter | 0.344 | 0.000 | 0.343 | |
linearTransform | 0.080 | 0.000 | 0.078 | |
lnTransform | 4.024 | 0.016 | 4.041 | |
logTransform | 0.220 | 0.004 | 0.225 | |
logarithm-class | 0.052 | 0.000 | 0.051 | |
logicalFilterResult-class | 0.000 | 0.000 | 0.001 | |
logicleTransform | 0.768 | 0.012 | 0.783 | |
manyFilterResult-class | 0.000 | 0.000 | 0.002 | |
multipleFilterResult-class | 0.004 | 0.000 | 0.001 | |
norm2Filter-class | 0.269 | 0.000 | 0.270 | |
normalizeActionItem-class | 0.000 | 0.000 | 0.001 | |
normalizeView-class | 0.000 | 0.000 | 0.001 | |
parameters-methods | 0.044 | 0.000 | 0.047 | |
polygonGate | 0.14 | 0.00 | 0.14 | |
quadGate | 0.464 | 0.000 | 0.465 | |
quadratic-class | 0.052 | 0.000 | 0.053 | |
quadraticTransform | 0.092 | 0.000 | 0.092 | |
ratio-class | 0.060 | 0.000 | 0.057 | |
read.FCS | 0.108 | 0.000 | 0.107 | |
read.FCSheader | 0.004 | 0.004 | 0.009 | |
read.flowSet | 0.232 | 0.000 | 0.232 | |
rectangleGate | 0.264 | 0.000 | 0.265 | |
sampleFilter-class | 0.120 | 0.004 | 0.122 | |
scaleTransform | 0.092 | 0.000 | 0.090 | |
singleParameterTransform-class | 0.000 | 0.000 | 0.002 | |
sinht-class | 0.056 | 0.000 | 0.055 | |
split-methods | 1.820 | 0.012 | 1.832 | |
splitScaleTransform | 3.496 | 0.008 | 3.502 | |
splitscale-class | 0.200 | 0.004 | 0.201 | |
squareroot-class | 0.048 | 0.000 | 0.050 | |
subsettingActionItem-class | 0.000 | 0.000 | 0.001 | |
subsettingView-class | 0.000 | 0.000 | 0.001 | |
timeFilter-class | 2.572 | 0.012 | 2.584 | |
transform-class | 0.004 | 0.000 | 0.003 | |
transformActionItem-class | 0.000 | 0.000 | 0.001 | |
transformFilter-class | 0.220 | 0.000 | 0.218 | |
transformList-class | 0.724 | 0.004 | 0.725 | |
transformMap-class | 0.000 | 0.000 | 0.001 | |
transformView-class | 0.004 | 0.000 | 0.001 | |
truncateTransform | 0.080 | 0.004 | 0.085 | |
unitytransform-class | 0.040 | 0.004 | 0.044 | |
view-class | 0.000 | 0.000 | 0.001 | |
workFlow-class | 0.004 | 0.000 | 0.001 | |
write.FCS | 0.080 | 0.000 | 0.081 | |
write.flowSet | 1.100 | 0.032 | 1.130 | |