cosmo 1.14.0
Oliver Bembom
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/cosmo | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'cosmo/DESCRIPTION' ... OK
* preparing 'cosmo':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
rm: cannot remove `src/*.o': No such file or directory
rm: cannot remove `src/*.so': No such file or directory
rm: cannot remove `Makevars': No such file or directory
* installing the package to re-build vignettes
* installing *source* package 'cosmo' ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c alloc.c -o alloc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c back.c -o back.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c constraints.c -o constraints.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c cosmo.c -o cosmo.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c cregistration.c -o cregistration.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c donlp2.c -o donlp2.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c estarts.c -o estarts.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c eval.c -o eval.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c fit.c -o fit.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c free.c -o free.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c io.c -o io.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c lstarts.c -o lstarts.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c matLib.c -o matLib.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c newx.c -o newx.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c optimize.c -o optimize.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c posterior.c -o posterior.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c precalc.c -o precalc.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c rio.c -o rio.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c theta.c -o theta.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c user_eval.c -o user_eval.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -IINCLUDE -I/usr/local/include -fpic -g -O2 -c xml.c -o xml.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o cosmo.so alloc.o back.o constraints.o cosmo.o cregistration.o donlp2.o estarts.o eval.o fit.o free.o init.o io.o lstarts.o matLib.o newx.o optimize.o posterior.o precalc.o rio.o theta.o user_eval.o xml.o -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst2772021802/cosmo/libs
** R
** data
** inst
** preparing package for lazy loading
Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to cosmo version 1.14.0
cosmo is free for research purposes only. For more details, type
license.cosmo(). Type citation('cosmo') for details on how to cite
cosmo in publications.
* DONE (cosmo)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* running cleanup
rm: cannot remove `src/*.o': No such file or directory
rm: cannot remove `src/*.so': No such file or directory
rm: cannot remove `Makevars': No such file or directory
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'cosmo_1.14.0.tar.gz'