Package: cellHTS2

Version: 2.12.0

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings cellHTS2_2.12.0.tar.gz

StartedAt: 2010-10-04 16:18:24 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 16:24:08 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 343.9 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS2.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/cellHTS2.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.12.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

name	user	system	elapsed
Bscore	3.551	0.031	4.352
ROC-class	0.575	0.009	0.776
ROC	2.281	0.012	2.860
annotate	1.718	0.012	2.373
bdgpbiomart	0.277	0.006	0.326
cellHTS-class	1.682	0.024	1.852
configurationAsScreenPlot	0.830	0.022	1.220
configure	1.453	0.015	1.721
convertOldCellHTS	2.049	0.007	2.809
convertWellCoordinates	0.001	0.000	0.002
data-KcViab	0.189	0.005	0.271
data-KcViabSmall	0.014	0.001	0.014
data-dualCh	0.015	0.002	0.043
data-oldKcViabSmall	0.014	0.001	0.022
getDynamicRange	1.169	0.010	1.384
getEnVisionRawData	0.096	0.003	0.137
getMeasureRepAgreement	1.103	0.008	1.565
getTopTable	2.318	0.013	2.434
getZfactor	0.770	0.005	0.859
imageScreen	1.979	0.010	2.331
normalizePlates	3.015	0.014	3.968
oneRowPerId	0.006	0.001	0.007
plotSpatialEffects	2.389	0.011	3.029
readHTAnalystData	2.252	0.010	3.080
readPlateList	1.631	0.013	2.136
scoreReplicates	2.115	0.010	2.282
scores2calls	1.945	0.008	2.089
setSettings	0.012	0.005	0.016
spatialNormalization	2.539	0.037	3.314
summarizeChannels	3.257	0.019	4.077
summarizeReplicates	1.911	0.009	2.333
templateDescriptionFile	0.004	0.001	0.012
updateCellHTS	0.032	0.002	0.055
write.tabdel	0.033	0.002	0.036
writeReport	0.013	0.002	0.014
writeTab	0.025	0.002	0.030