bgx 1.12.0
Ernest Turro
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/bgx | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | [ OK ] | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'bgx/DESCRIPTION' ... OK
* preparing 'bgx':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'bgx' ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for C compiler vendor... gnu
checking whether C compiler accepts -ffast-math... yes
checking whether C compiler accepts -O3... yes
checking build system type... x86_64-unknown-linux-gnu
checking host system type... x86_64-unknown-linux-gnu
checking for gcc architecture flag...
checking for x86 cpuid 0 output... a:756e6547:6c65746e:49656e69
checking for x86 cpuid 1 output... 6f6:20800:4e3bd:bfebfbff
checking whether C compiler accepts -march=pentiumpro... no
checking whether C compiler accepts -mcpu=pentiumpro... no
checking whether C compiler accepts -mpentiumpro... no
checking for gcc architecture flag... unknown
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for main in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I ../boostIncl -I/usr/local/include -fpic -g -O2 -ffast-math -O3 -DUSING_R -c bgx.cc -o bgx.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I ../boostIncl -I/usr/local/include -fpic -g -O2 -ffast-math -O3 -DUSING_R -c bgx_frontend.cc -o bgx_frontend.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I ../boostIncl -I/usr/local/include -fpic -g -O2 -g -O2 -ffast-math -O3 -c qnorm.c -o qnorm.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I ../boostIncl -I/usr/local/include -fpic -g -O2 -ffast-math -O3 -DUSING_R -c rundir.cc -o rundir.o
g++ -I/home/biocbuild/bbs-2.6-bioc/R/include -I ../boostIncl -I/usr/local/include -fpic -g -O2 -ffast-math -O3 -DUSING_R -c sokal.cc -o sokal.o
g++ -shared -L/usr/local/lib64 -o bgx.so bgx.o bgx_frontend.o qnorm.o rundir.o sokal.o -lm -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
rm -r ../boostIncl
installing to /tmp/Rinst2542978408/bgx/libs
** R
** inst
** preparing package for lazy loading
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (bgx)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'bgx_1.12.0.tar.gz'