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Package 28/389 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
aroma.light 1.16.1 Henrik Bengtsson
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | [ OK ] | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
Package: aroma.light |
Version: 1.16.1 |
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings aroma.light_1.16.1.tar.gz |
StartedAt: 2010-10-04 15:55:59 -0700 (Mon, 04 Oct 2010) |
EndedAt: 2010-10-04 15:57:13 -0700 (Mon, 04 Oct 2010) |
EllapsedTime: 74.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: aroma.light.Rcheck |
Warnings: 0 |
* checking for working pdflatex ... OK * using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/aroma.light.Rcheck' * using R version 2.11.1 (2010-05-31) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'aroma.light/DESCRIPTION' ... OK * this is package 'aroma.light' version '1.16.1' * package encoding: latin1 * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'aroma.light' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking examples ... OK * checking PDF version of manual ... OK
aroma.light.Rcheck/00install.out:
* install options are ' --no-html' * installing *source* package 'aroma.light' ... ** R ** inst ** preparing package for lazy loading R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help. ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (aroma.light)
aroma.light.Rcheck/aroma.light-Ex.timings:
name | user | system | elapsed | |
backtransformAffine.matrix | 0.004 | 0.000 | 0.004 | |
backtransformPrincipalCurve.matrix | 1.040 | 0.016 | 1.056 | |
calibrateMultiscan.matrix | 0 | 0 | 0 | |
callNaiveGenotypes.numeric | 0.656 | 0.008 | 0.664 | |
distanceBetweenLines | 0.008 | 0.008 | 0.014 | |
findPeaksAndValleys.numeric | 0.072 | 0.000 | 0.074 | |
fitPrincipalCurve.matrix | 0.652 | 0.004 | 0.659 | |
fitXYCurve.matrix | 0.072 | 0.000 | 0.070 | |
iwpca.matrix | 0.012 | 0.000 | 0.011 | |
likelihood.smooth.spline | 0.42 | 0.00 | 0.42 | |
medianPolish.matrix | 0.012 | 0.000 | 0.010 | |
normalizeAffine.matrix | 19.121 | 0.068 | 19.291 | |
normalizeCurveFit.matrix | 18.641 | 0.084 | 19.008 | |
normalizeDifferencesToAverage.list | 0.02 | 0.00 | 0.02 | |
normalizeFragmentLength | 0.748 | 0.012 | 0.772 | |
normalizeQuantileRank.list | 0.164 | 0.000 | 0.174 | |
normalizeQuantileRank.matrix | 0.100 | 0.004 | 0.107 | |
normalizeQuantileSpline.matrix | 2.544 | 0.036 | 2.585 | |
normalizeTumorBoost.numeric | 0.096 | 0.008 | 0.105 | |
robustSmoothSpline | 0.064 | 0.004 | 0.132 | |
sampleCorrelations.matrix | 0.164 | 0.000 | 0.165 | |
sampleTuples | 0.000 | 0.004 | 0.000 | |
weightedMedian | 5.017 | 0.076 | 5.092 | |
wpca.matrix | 0.072 | 0.000 | 0.073 | |