affyio 1.16.0
Benjamin Milo Bolstad
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/affyio | | Last Changed Rev: 46401 / Revision: 49923 | | Last Changed Date: 2010-04-22 11:21:23 -0700 (Thu, 22 Apr 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'affyio' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
making DLL ...
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c fread_functions.c -o fread_functions.o
fread_functions.c:300: warning: 'swap_uint_32' defined but not used
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_abatch.c -o read_abatch.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_bpmap.c -o read_bpmap.o
read_bpmap.c: In function 'ReadBPMAPHeader':
read_bpmap.c:110: warning: overflow in implicit constant conversion
read_bpmap.c:78: warning: unused variable 'version_number_int'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_cdf_xda.c -o read_cdf_xda.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_cdffile2.c -o read_cdffile2.o
read_cdffile2.c:364: warning: 'token_ends_with' defined but not used
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_celfile_generic.c -o read_celfile_generic.o
read_celfile_generic.c: In function 'read_genericcel_file_intensities':
read_celfile_generic.c:710: warning: unused variable 'fread_err'
read_celfile_generic.c:708: warning: unused variable 'cur_index'
read_celfile_generic.c:707: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_stddev':
read_celfile_generic.c:760: warning: unused variable 'fread_err'
read_celfile_generic.c:758: warning: unused variable 'cur_index'
read_celfile_generic.c:757: warning: unused variable 'j'
read_celfile_generic.c: In function 'read_genericcel_file_npixels':
read_celfile_generic.c:814: warning: unused variable 'fread_err'
read_celfile_generic.c:812: warning: unused variable 'cur_index'
read_celfile_generic.c:811: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_get_masks_outliers':
read_celfile_generic.c:876: warning: unused variable 'fread_err'
read_celfile_generic.c:874: warning: unused variable 'cur_index'
read_celfile_generic.c:873: warning: unused variable 'j'
read_celfile_generic.c: In function 'generic_apply_masks':
read_celfile_generic.c:968: warning: unused variable 'fread_err'
read_celfile_generic.c:962: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_intensities':
read_celfile_generic.c:1714: warning: unused variable 'fread_err'
read_celfile_generic.c:1712: warning: unused variable 'cur_index'
read_celfile_generic.c:1711: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_stddev':
read_celfile_generic.c:1765: warning: unused variable 'fread_err'
read_celfile_generic.c:1763: warning: unused variable 'cur_index'
read_celfile_generic.c:1762: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzread_genericcel_file_npixels':
read_celfile_generic.c:1819: warning: unused variable 'fread_err'
read_celfile_generic.c:1817: warning: unused variable 'cur_index'
read_celfile_generic.c:1816: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_get_masks_outliers':
read_celfile_generic.c:1884: warning: unused variable 'fread_err'
read_celfile_generic.c:1882: warning: unused variable 'cur_index'
read_celfile_generic.c:1881: warning: unused variable 'j'
read_celfile_generic.c: In function 'gzgeneric_apply_masks':
read_celfile_generic.c:1976: warning: unused variable 'fread_err'
read_celfile_generic.c:1970: warning: unused variable 'j'
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_clf.c -o read_clf.o
read_clf.c: In function 'read_clf_header':
read_clf.c:557: warning: unused variable 'i'
read_clf.c: At top level:
read_clf.c:292: warning: 'token_ends_with' defined but not used
read_clf.c:389: warning: 'IsCommentLine' defined but not used
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_generic.c -o read_generic.o
read_generic.c: In function 'determine_MIMETYPE':
read_generic.c:399: warning: control reaches end of non-void function
x86_64-w64-mingw32-gcc -I"D:/biocbld/bbs-2.6-bioc/R/include" -DHAVE_ZLIB -O2 -Wall -std=gnu99 -c read_pgf.c -o read_pgf.o
read_pgf.c: In function 'read_pgf_header':
read_pgf.c:901: warning: unused variable 'i'
read_pgf.c: In function 'insert_level0':
read_pgf.c:1167: warning: unused variable 'temp_ptr'
read_pgf.c: In function 'pgf_count_probeset_types':
read_pgf.c:1265: warning: assignment from incompatible pointer type
read_pgf.c: At top level:
read_pgf.c:363: warning: 'token_ends_with' defined but not used
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o affyio.dll tmp.def fread_functions.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_pgf.o -lRzlib -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/affyio.buildbin-libdir/affyio/libs/x64
... done
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affyio' as affyio_1.16.0.zip
* DONE (affyio)