Package: VanillaICE

Version: 1.10.0

Command: chmod a+r VanillaICE -R && E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD build VanillaICE

StartedAt: 2010-10-04 14:43:32 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 14:44:24 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 52.1 seconds

RetCode: 0

Status:  OK

PackageFile: VanillaICE_1.10.0.tar.gz

PackageFileSize: 2.18 MiB

* checking for file 'VanillaICE/DESCRIPTION' ... OK
* preparing 'VanillaICE':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'VanillaICE' ...
** libs
  making DLL ...
gcc -I"E:/biocbld/bbs-2.6-bioc/R/include"         -O3 -Wall  -std=gnu99 -c viterbi.c -o viterbi.o
viterbi.c: In function 'viterbi':
viterbi.c:61: warning: unused variable 'tp'
gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def viterbi.o -lm -LE:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to E:/biocbld/bbs-2.6-bioc/tmpdir/Rinst692819775/VanillaICE/libs
  ... done
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: oligoClasses
================================================================================
Welcome to oligoClasses version 1.10.0
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Loading package ff2.2-0

- getOption("fftempdir")=="E:/biocbld/bbs-2.6-bioc/tmpdir/RtmpqTfvEH"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16095641.6 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==804782080 -- consider a different value for tuning your system

Welcome to crlmm version 1.6.6

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to VanillaICE version 1.10.0

* DONE (VanillaICE)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
WARNING: directory 'VanillaICE/inst/testing' is empty
* building 'VanillaICE_1.10.0.tar.gz'