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Package 367/389HostnameOS / ArchBUILDCHECKBUILD BIN
Starr 1.4.4
Benedikt Zacher
Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/Starr
Last Changed Rev: 47511 / Revision: 49923
Last Changed Date: 2010-06-17 04:57:38 -0700 (Thu, 17 Jun 2010)
wilson1 Linux (openSUSE 11.1) / x86_64 [ OK ] OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: Starr
Version: 1.4.4
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build Starr
StartedAt: 2010-10-04 14:50:52 -0700 (Mon, 04 Oct 2010)
EndedAt: 2010-10-04 14:51:53 -0700 (Mon, 04 Oct 2010)
EllapsedTime: 60.8 seconds
RetCode: 0
Status:  OK 
PackageFile: Starr_1.4.4.tar.gz
PackageFileSize: 1.391 MiB

Command output

* checking for file 'Starr/DESCRIPTION' ... OK
* preparing 'Starr':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'Starr' ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fpic  -g -O2 -c ahocorasick.c -o ahocorasick.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fpic  -g -O2 -c collect.c -o collect.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fpic  -g -O2 -c rm_small_peak.c -o rm_small_peak.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -DHAVE_ZLIB=1  -I/usr/local/include    -fpic  -g -O2 -c sort_by_genomic.c -o sort_by_genomic.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o Starr.so ahocorasick.o collect.o rm_small_peak.o sort_by_genomic.o -lz -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst181395289/Starr/libs
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: RColorBrewer
Loading required package: limma
Loading required package: Matrix
Loading required package: lattice

Attaching package: 'Matrix'

The following object(s) are masked from 'package:base':

    det

Loading required package: grid

Attaching package: 'affy'

The following object(s) are masked from 'package:Ringo':

    probes

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Starr)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'Starr_1.4.4.tar.gz'