Package: RbcBook1

Version: 1.16.0

Command: E:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings RbcBook1_1.16.0.tar.gz

StartedAt: 2010-10-04 19:43:42 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 19:44:26 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 44.5 seconds

RetCode: 0

Status:  OK

CheckDir: RbcBook1.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'E:/biocbld/bbs-2.6-bioc/meat/RbcBook1.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'RbcBook1/DESCRIPTION' ... OK
* this is package 'RbcBook1' version '1.16.0'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RbcBook1' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcStangle: possible error in grep("chapter{", txt,
  extended = FALSE): unused argument(s) (extended =
  FALSE)
checkPackage: possible error in sub("Rpackage{", "",
  sub("}", "", unique(p), extended = FALSE), extended
  = FALSE): unused argument(s) (extended = FALSE)
checkPackage: possible error in sub("}", "",
  unique(p), extended = FALSE): unused argument(s)
  (extended = FALSE)
checkRnw: possible error in
  grep("caption.*%.*[a-zA-Z]", txt, extended =
  FALSE): unused argument(s) (extended = FALSE)
remapAff: no visible binding for global variable
  'hgu95av2SYMBOL'
* checking Rd files ... NOTE
prepare_Rd: requireAllBook1.Rd:9-10: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'RbcBook1' ...
** R
** data
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RbcBook1)

name	user	system	elapsed
bcStangle	0	0	0
bcSweave	0	0	0
bcr	0.61	0.00	0.61
checkVerbatimLines	0.01	0.00	0.01
imageSize	0	0	0
perf	0	0	0
requireAllBook1	0	0	0
rpart2gNEL	0.13	0.03	0.76