MotIV 1.1.3
Eloi Mercier , Raphael Gottardo
| Snapshot Date: 2010-10-04 11:22:20 -0700 (Mon, 04 Oct 2010) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_6/madman/Rpacks/MotIV | | Last Changed Rev: 47149 / Revision: 49923 | | Last Changed Date: 2010-05-26 11:24:55 -0700 (Wed, 26 May 2010) |
| wilson1 | Linux (openSUSE 11.1) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | [ OK ] | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'MotIV/DESCRIPTION' ... OK
* preparing 'MotIV':
* checking DESCRIPTION meta-information ... OK
* cleaning src
make: Nothing to be done for `clean'.
* installing the package to re-build vignettes
* installing *source* package 'MotIV' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
making DLL ...
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:789: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:588: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:422: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:240: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp:240: warning: 'revScore' may be used uninitialized in this function
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c ColumnComp.cpp -o ColumnComp.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c DeclareAll.cpp -o DeclareAll.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c Motif.cpp -o Motif.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c MotifMatch.cpp -o MotifMatch.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c PlatformSupport.cpp -o PlatformSupport.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c RandPSSMGen.cpp -o RandPSSMGen.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -ID:/biocbld/bbs-2.6-bioc/R/src/include -IC:/GSL_test64/include -O2 -Wall -c generateScoresDB.cpp -o generateScoresDB.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -LC:/GSL_test64/lib -lgsl -lgslcblas -lm -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/tmpdir/Rinst137209130/MotIV/libs/x64
... done
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MotIV"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (MotIV)
* creating vignettes ... OK
* cleaning src
make: Nothing to be done for `clean'.
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'MotIV_1.1.3.tar.gz'