Package: MLInterfaces

Version: 1.28.0

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings MLInterfaces_1.28.0.tar.gz

StartedAt: 2010-10-04 17:55:23 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:58:23 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 180.4 seconds

RetCode: 0

Status:  OK

CheckDir: MLInterfaces.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/MLInterfaces.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MLInterfaces/DESCRIPTION' ... OK
* this is package 'MLInterfaces' version '1.28.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MLInterfaces' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: MLIntInternals.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘MLInterfaces’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.


Attaching package: 'genefilter'

The following object(s) are masked from 'package:MASS':

    area

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MLInterfaces)

name	user	system	elapsed
MLearn-new	31.842	0.973	33.208
RAB	0.247	0.009	0.257
balKfold.xvspec	0.015	0.003	0.017
classifierOutput-class	7.148	0.028	7.267
clusteringOutput-class	0.002	0.000	0.002
confuMat-methods	0.673	0.022	0.696
fs.absT	0.034	0.000	0.034
fsHistory	0.146	0.004	0.150
learnerSchema-class	0.001	0.000	0.002
planarPlot-methods	4.478	0.345	4.966
raboostCont-class	0.002	0.001	0.002
varImpStruct-class	1.279	0.057	1.352
xvalLoop	0.001	0.001	0.001
xvalSpec	0.242	0.003	0.249