Package: HTqPCR

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Versions/2.11/Resources/bin/R CMD check --no-vignettes --timings HTqPCR_1.2.0.tar.gz

StartedAt: 2010-10-04 17:28:23 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:29:56 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 92.5 seconds

RetCode: 0

Status:  OK

CheckDir: HTqPCR.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.6-bioc/meat/HTqPCR.Rcheck'
* using R version 2.11.1 Patched (2010-05-31 r52167)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	4.771	0.158	5.102
cbind	0.034	0.005	0.046
changeCtLayout	0.046	0.004	0.060
clusterCt	0.721	0.048	0.810
filterCategory	0.161	0.006	0.173
filterCtData	0.324	0.009	0.345
heatmapSig	2.566	0.029	2.826
limmaCtData	1.431	0.020	1.493
mannwhitneyCtData	2.384	0.019	2.662
normalizeCtData	0.573	0.021	0.602
plotCVBoxes	0.254	0.003	0.277
plotCtBoxes	0.082	0.003	0.088
plotCtCard	0.079	0.003	0.083
plotCtCategory	3.721	0.043	3.823
plotCtCor	0.076	0.003	0.082
plotCtDensity	0.050	0.006	0.057
plotCtHeatmap	4.573	0.054	4.691
plotCtHistogram	0.014	0.002	0.016
plotCtOverview	0.166	0.005	0.175
plotCtPCA	0.065	0.005	0.069
plotCtPairs	1.136	0.009	1.177
plotCtRQ	0.587	0.003	0.602
plotCtReps	0.202	0.003	0.205
plotCtScatter	0.037	0.002	0.039
plotCtSignificance	0.626	0.018	0.660
plotGenes	0.039	0.003	0.042
qPCRpros	0.007	0.001	0.008
qPCRraw	0.007	0.001	0.008
qPCRset-class	0.050	0.003	0.053
readCtData	0.079	0.006	0.084
setCategory	6.670	0.183	6.972
ttestCtData	1.742	0.005	1.758