Package: GenomeGraphs

Version: 1.8.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings GenomeGraphs_1.8.0.tar.gz

StartedAt: 2010-10-04 17:45:03 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 17:45:51 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 47.7 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0.000	0.000	0.001
BaseTrack-class	0	0	0
DisplayPars-class	0.000	0.000	0.001
DisplayPars	0.376	0.008	4.641
ExonArray-class	0.004	0.000	0.002
Gene-class	0	0	0
GeneModel-class	0.112	0.000	0.112
GeneRegion-class	0	0	0
GenericArray-class	0	0	0
GenomeAxis-class	0	0	0
HighlightRegion-class	0	0	0
Ideogram-class	0	0	0
ImplementsTrackOverlay-class	0.000	0.000	0.001
Legend-class	0.000	0.000	0.001
MappedRead-class	0	0	0
Overlay-class	0.000	0.000	0.001
RectangleOverlay-class	0.000	0.000	0.001
Segmentation-class	0.004	0.000	0.001
Smoothing-class	0	0	0
TextOverlay-class	0.000	0.000	0.001
Title-class	0.000	0.000	0.001
TrackOverlay-class	0.004	0.000	0.001
Transcript-class	0.000	0.000	0.001
TranscriptRegion-class	0.000	0.000	0.001
cn	0.000	0.000	0.001
exonProbePos	0	0	0
gdObject-class	0.000	0.000	0.002
gdPlot	1.964	0.000	6.820
getPar	0.004	0.000	0.002
ideogramTab	0.000	0.000	0.002
intensity	0	0	0
makeAnnotationTrack	0.032	0.000	0.034
makeBaseTrack	0.000	0.000	0.001
makeExonArray	0.000	0.000	0.001
makeGene	0.004	0.000	0.001
makeGeneModel	0	0	0
makeGeneRegion	0	0	0
makeGenericArray	0.004	0.000	0.001
makeGenomeAxis	0	0	0
makeIdeogram	0.000	0.000	0.001
makeLegend	0.004	0.000	0.001
makeRectangleOverlay	0.080	0.004	0.084
makeSegmentation	0.060	0.000	0.061
makeSmoothing	0.084	0.000	0.082
makeTextOverlay	0.072	0.000	0.071
makeTitle	0.000	0.000	0.001
makeTranscript	0	0	0
probestart	0	0	0
segEnd	0	0	0
segStart	0.000	0.000	0.001
segments	0	0	0
seqDataEx	0.02	0.00	0.02
setPar	0.012	0.000	0.015
showDisplayOptions	0.004	0.000	0.002
unrData	0	0	0
unrNProbes	0	0	0
unrPositions	0	0	0
yeastCons1	0	0	0