Package: ExpressionView

Version: 1.1.0

Command: D:\biocbld\bbs-2.6-bioc\R\bin\R.exe CMD check --no-vignettes --timings ExpressionView_1.1.0.tar.gz

StartedAt: 2010-10-04 16:36:48 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 16:38:53 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 125.5 seconds

RetCode: 0

Status:  OK

CheckDir: ExpressionView.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory 'D:/biocbld/bbs-2.6-bioc/meat/ExpressionView.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ExpressionView/DESCRIPTION' ... OK
* this is package 'ExpressionView' version '1.1.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ExpressionView' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'ExpressionView' ...
** libs
  making DLL ...
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c order.cpp -o order.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.6-bioc/R/include"         -O2 -Wall  -c orderclusters.cpp -o orderclusters.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o ExpressionView.dll tmp.def order.o orderclusters.o -LD:/biocbld/bbs-2.6-bioc/R/bin -lR
installing to D:/biocbld/bbs-2.6-bioc/meat/ExpressionView.Rcheck/ExpressionView/libs/x64
  ... done
** R
** inst
** preparing package for lazy loading
Loading required package: bitops
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
Loading required package: eisa
Loading required package: isa2
Loading required package: AnnotationDbi
Loading required package: Category
Loading required package: genefilter
Loading required package: biclust
Loading required package: MASS

Attaching package: 'MASS'

The following object(s) are masked from 'package:genefilter':

    area

Loading required package: grid
Loading required package: vcd
Loading required package: colorspace
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ExpressionView)

name	user	system	elapsed
ExportEV	16.69	0.11	16.84
LaunchEV	0	0	0
OrderEV	6.12	0.03	6.16