* checking for file 'DNAcopy/DESCRIPTION' ... OK
* preparing 'DNAcopy':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
* installing *source* package 'DNAcopy' ...
** libs
gfortran -fpic -g -O -c cbsWtstats.f -o cbsWtstats.o
gfortran -fpic -g -O -c cbststats.f -o cbststats.o
gfortran -fpic -g -O -c changepoints-wtd.f -o changepoints-wtd.o
gfortran -fpic -g -O -c changepoints.f -o changepoints.o
gfortran -fpic -g -O -c esegment.f -o esegment.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c flchoose.c -o flchoose.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c fphyper.c -o fphyper.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c fpnorm.c -o fpnorm.o
gfortran -fpic -g -O -c getbdry.f -o getbdry.o
gfortran -fpic -g -O -c prune.f -o prune.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.6-bioc/R/include -I/usr/local/include -fpic -g -O2 -c rshared.c -o rshared.o
gfortran -fpic -g -O -c segmentp.f -o segmentp.o
gfortran -fpic -g -O -c smoothCNA.f -o smoothCNA.o
gfortran -fpic -g -O -c tailprobs.f -o tailprobs.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o DNAcopy.so cbsWtstats.o cbststats.o changepoints-wtd.o changepoints.o esegment.o flchoose.o fphyper.o fpnorm.o getbdry.o prune.o rshared.o segmentp.o smoothCNA.o tailprobs.o -lgfortran -lm -L/home/biocbuild/bbs-2.6-bioc/R/lib -lR
installing to /tmp/Rinst1368661305/DNAcopy/libs
** R
** data
** moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (DNAcopy)
* creating vignettes ... OK
* cleaning src
* removing junk files
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* building 'DNAcopy_1.22.1.tar.gz'