Package: AgiMicroRna

Version: 1.2.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings AgiMicroRna_1.2.0.tar.gz

StartedAt: 2010-10-04 15:48:28 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 15:51:00 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 152.7 seconds

RetCode: 0

Status:  OK

CheckDir: AgiMicroRna.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/AgiMicroRna.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AgiMicroRna/DESCRIPTION' ... OK
* this is package 'AgiMicroRna' version '1.2.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'AgiMicroRna' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'AgiMicroRna' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AgiMicroRna)

name	user	system	elapsed
HeatMapMicroRna	1.052	0.072	1.126
PCAplotMicroRna	6.888	0.180	7.094
RleMicroRna	3.348	0.028	3.378
basicLimma	0.000	0.000	0.001
boxplotMicroRna	0.584	0.008	0.592
cvArray	0	0	0
filterMicroRna	3.725	0.044	3.768
getDecideTests	0	0	0
hierclusMicroRna	0.008	0.004	0.009
mvaBASIC	1.692	0.016	1.709
mvaMicroRna	17.177	0.236	17.972
plotDensityMicroRna	0.520	0.004	0.524
pvalHistogram	0	0	0
qcPlots	0	0	0
readMicroRnaAFE	0	0	0
rmaMicroRna	70.616	1.084	73.040
significantMicroRna	0.760	0.016	0.774
tgsMicroRna	0.968	0.008	0.974
tgsNormalization	0	0	0
writeEset	0.004	0.000	0.001