Package: Agi4x44PreProcess

Version: 1.8.0

Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD check --no-vignettes --timings Agi4x44PreProcess_1.8.0.tar.gz

StartedAt: 2010-10-04 15:48:04 -0700 (Mon, 04 Oct 2010)

EndedAt: 2010-10-04 15:49:06 -0700 (Mon, 04 Oct 2010)

EllapsedTime: 61.8 seconds

RetCode: 0

Status:  OK

CheckDir: Agi4x44PreProcess.Rcheck

Warnings: 0

* checking for working pdflatex ... OK
* using log directory '/loc/home/biocbuild/bbs-2.6-bioc/meat/Agi4x44PreProcess.Rcheck'
* using R version 2.11.1 (2010-05-31)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Agi4x44PreProcess/DESCRIPTION' ... OK
* this is package 'Agi4x44PreProcess' version '1.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Agi4x44PreProcess' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* install options are ' --no-html'

* installing *source* package 'Agi4x44PreProcess' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Agi4x44PreProcess)

name	user	system	elapsed
Agi4x44PreProcess-package	0.004	0.000	0.002
BGandNorm	0	0	0
BoxPlot	0	0	0
CV.rep.probes	0.000	0.000	0.001
HeatMap	0.000	0.000	0.001
MVAplotMED	0	0	0
MVAplotMEDctrl	2.084	0.020	2.107
PCAplot	0.000	0.000	0.001
RLE	0	0	0
boxplotNegCtrl	0	0	0
build.eset	0	0	0
build.mappings	0	0	0
dd	0	0	0
ensembl.htmlpage	0	0	0
filter.NonUnifOL	0	0	0
filter.PopnOL	0	0	0
filter.control	0	0	0
filter.isfound	0	0	0
filter.probes	0	0	0
filter.saturated	0.000	0.004	0.000
filter.wellaboveBG	0	0	0
filter.wellaboveNEG	0	0	0
genes.rpt.agi	4.012	0.072	4.082
gsea.files	0	0	0
hierclus	0	0	0
plotDensity	0	0	0
read.AgilentFE	0.160	0.004	0.162
read.targets	0.000	0.000	0.002
summarize.probe	0	0	0
targets	0	0	0
write.eset	0	0	0