MAQCsubset 1.0.18
VJ Carey
| Snapshot Date: 2010-04-02 12:27:31 -0700 (Fri, 02 Apr 2010) | | URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MAQCsubset | | Last Changed Rev: 1053 / Revision: 1201 | | Last Changed Date: 2009-10-13 23:17:03 -0700 (Tue, 13 Oct 2009) |
| wilson2 | Linux (openSUSE 11.1) / x86_64 | OK | WARNINGS | |
| pitt | Mac OS X Tiger (10.4.11) / i386 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* checking for working pdflatex ... OK
* using log directory '/Users/biocbuild/bbs-2.5-data-experiment/meat/MAQCsubset.Rcheck'
* using R version 2.10.1 Patched (2009-12-14 r50738)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'MAQCsubset/DESCRIPTION' ... OK
* this is package 'MAQCsubset' version '1.0.18'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MAQCsubset' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking for unstated dependencies in R code ... WARNING
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: ‘boxplot’, ‘hist’
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: ‘boxplot’, ‘hist’
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
Warning in get_S4_generics_with_methods(penv) :
Generics g in env = <environment: package:lumi> where hasMethods(g, env) errors: ‘boxplot’, ‘hist’
May need something like
importFrom("graphics", "boxplot")
importFrom("graphics", "hist")
in NAMESPACE.
See the information on DESCRIPTION files in the chapter 'Creating R
packages' of the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented S4 methods:
generic 'plot' and siglist 'proboStruct,ANY'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
/Users/biocbuild/bbs-2.5-data-experiment/meat/MAQCsubset.Rcheck/00check.log
for details
* install options are ' --no-html'
* installing *source* package ‘MAQCsubset’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: mgcv
This is mgcv 1.6-1. For overview type `help("mgcv-package")'.
Loading required package: preprocessCore
Loading required package: RSQLite
Loading required package: DBI
Loading required package: MASS
Creating a new generic function for "lines" in "MAQCsubset"
** help
*** installing help indices
** building package indices ...
* DONE (MAQCsubset)